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| Aflevering | Eerste uitzending |
|---|---|
| S03E01 - The Xindi | 10/09/2003 |
| S03E02 - Anomaly | 17/09/2003 |
| S03E03 - Extinction | 24/09/2003 |
| S03E04 - Rajiin | 01/10/2003 |
| S03E05 - Impulse | 08/10/2003 |
| S03E06 - Exile | 15/10/2003 |
| S03E07 - The Shipment | 29/10/2003 |
| S03E08 - Twilight | 05/11/2003 |
| S03E09 - North Star | 12/11/2003 |
| S03E10 - Similitude | 19/11/2003 |
| S03E11 - Carpenter Street | 26/11/2003 |
| S03E12 - Chosen Realm | 14/01/2004 |
| S03E13 - Proving Ground | 21/01/2004 |
| S03E14 - Stratagem | 04/02/2004 |
| S03E15 - Harbinger | 11/02/2004 |
| S03E16 - Doctor's Orders | 18/02/2004 |
| S03E17 - Hatchery | 25/02/2004 |
| S03E18 - Azati Prime | 03/03/2004 |
| S03E19 - Damage | 21/04/2004 |
| S03E20 - The Forgotten | 28/04/2004 |
| S03E21 - E 2 | 05/05/2004 |
| S03E22 - The Council | 12/05/2004 |
| S03E23 - Countdown | 19/05/2004 |
| S03E24 - Zero Hour | 26/05/2004 |